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I have Firefox Containers, cookie auto-delete, ublock origin, privacy badger.

The site is unavailable to me even in a regular Firefox window. I am guessing it's the tracker blocking or maybe I have some config settings that is doing this.

that's a very good question. the one thing that private mode adds is not contaminating your own history. there is a nice extension for temporary containers that can create new containers on demand and will automatically delete them if they are not used for a while. i don't know if firefox is working on per-container history, but i think, in combination with that extension that would be a useful alternative to private mode

By any chance, do you mean that containers work on the phone version of FF? Last time I tried, there were problems with the addons menu UI.