My own experience was as a physics student, 30 years ago. Students paid a heavy price for being able to print and submit the entire thesis with no manual intervention. The students who chose LaTeX took the longest at it. I didn't have access to a Unix terminal anyway, and banged out my thesis on an MS-DOS machine. Whatever my word processor couldn't support, I added by hand. The readers were OK with this.
My solution to all typographic problems was "take care of it after defense." I spent a few days after my defense getting my copy to be ready for duplication, including sticking all of the page numbers on with glue because I couldn't make inline figures work.