https://en.wikipedia.org/wiki/Developmental_biology
And the proteins, and the maps and schedules for their production, and the machinery which gives them effect, are all encoded in the DNA.
I haven't actually followed Levin's recent work, so i don't know if he's going round actively misleading people about this, or if people are hearing about his work and assuming that's the whole story. To be honest, from what i've heard, he seems like a crank.