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`nix-index` is a flake-compatible alternative: https://github.com/bennofs/nix-index

I am using flakes, and now I know why `command-not-found` doesn't work, thank you.

You can make it work again! It's a one-liner in configuration.nix. Solutions and alternatives were covered in detail in a recent Discourse thread: https://discourse.nixos.org/t/which-package-provides-ifconfi...