No. They are adding "deno:package@version" native imports, and they are adding a deno.json file to specify them. They are adding dependency resolution logic for these native deno packages to deno itself.
The fact that all this interoperates with NPM as well is just an added bonus. But even if NPM died tomorrow, deno would go on having a package system, because they have realized how important it actually is (to fix things like what they call the "duplicate dependency problem").