The only real difference between in degree and ala-carte is that degree seeking students will have more options for how to pay for their education. Once we are accredited, a vast array of financing becomes available for students pursuing a degree. Some are good (grants, scholarships, state subsidies) some are not (Student loans), but having options for our students helps a great deal. We structured our program this way because we come from your exact position: why can't I take the classes I want without all the BS?
I think the reason more schools don't do this is that it would expose the true cost of these classes, which at institutions like Stanford or MIT can easily exceed $5,000 per class. Actually, after fees, housing and books, $10k is closer to accurate. The market for $5k classes is not huge, and without putting everything on a gigantic student loan credit card, few rational consumers would pay the price.