If you work at a place that requires strict adherence to user stories or whatever other bit of methodology you find repugnant, then either try to change the way things are done or quit and find a place that suits you better. I get the impression from some posts on HN that people are toiling away under Agile regimes for years, letting rage build inside them at the indignities of having to estimate/write user stories/whatever else.
If you feel that way, consider joining an early stage startup - there isn't strict adherence to much of anything, and you can have a lot of impact on how things are done. You might take a pay cut, but if you hate the day-to-day so much, that's probably worth it. If you won't leave somewhere that you hate working because they're paying you $500k and you don't want to make less money, I don't think you really deserve sympathy anyway.