Agreed, but is it a choice or a requirement from the software? I love choice, that instances
(and users!) can and should get to choose the level of indexing. If it's software wide, not sure i can get behind that. Especially since .. doesn't ActivityPub sort of ruin that? Ie any instance you federate with could expose your data, regardless of Mastodon's rules.
Federated instance data visibility and agreed visibility rules of course come into play. But if i understand this right it would mean you can only federate with instances or software that agrees to your privacy rules. Which is totally viable, but that also then means Mastodon can't federate with, for example, a Reddit clone that wants to be indexed.
It's a complex web of requirements. Definitely something i'll be thinking on as i implement my own ActivityPub instance.