I know nothing about it and I was surprised to read about this situation because I would have assumed a submersible would be in fairly constant sonar contact with its surface vessel. I would've thought it would be followed a rigidly planned route and its location relative to the surface ship would be well understood at all times, i.e. "you are 3508.3m below us, 340m east, 233.1m south."
How does a submersible "get lost"?