Stuff like this triggers costly (and sometimes dangerous) search & rescue parties.
A regular boat has to be registered in most US states. I'm not a boating expert, but it would seem some combination of "well its not a boat" & "International waters" lead to it being less regulated/inspected than Joe 6 packs fishing boat.
Or more specifically, because the sub is taken out to international waters by its support ship, it would seem the sub falls under less regulation than the support ship carrying it, despite being a higher risk profile..