There's plenty of places that sell glass dishes with glass lids. I hadn't even heard that plastic lids were thing until I read your post so had a look on Amazon and even on there it seemed to be ~50/50 mix of plastic and glass lids.
You don't need to go vintage either. The Pyrex dish I bought around 5 years ago, to replace another Pyrex dish that I accidentally dropped, came with a glass lid. And the set it was replacing, which was maybe around 10 to 15 years old, had glass lids too.
As for being microwave safe, I thought the whole point of Pyrex dishes were that they could be thrown in the oven, microwave, under a grill and pretty much everywhere? Or does this vintage set have visible signs of age, which makes you concerned?