If your quartz watch battery goes flat you replace it straight away because a watch with a flat battery is 100% useless. But if the battery on your motherboard goes flat you don't even notice, so why would you replace it? To a layperson, "my computer's time is always wrong" is not likely to be caused by a random flat battery that they didn't know existed.
Microsoft came up with this "Secure Time" system so that even computers with flat batteries would be able to work out what time it is, but obviously it is kind of weird and sometimes makes wrong decisions.