I think the question isn’t “what is the issue with negative weights” rather “what is a real world example of negative weights” which the article doesn’t really explain.
I don’t know any off hand. I would guess its when a path has a benefit incurred rather than a cost. I.e. in a monopoly board it might be shorter to get to a destination by getting thrown in jail first, but the longer path around the whole board comes with a benefit I.e. negative weight of receiving $200 by crossing the start.
Your reply does help clarify the “why not normalize” which is helpful. I’m still curious for other examples of negative weights.