Not to mention the fact that a lot of researchers are buying thing with grant money, and so can be, in some cases, somewhat price insensitive.
I don't doubt that the commercial one is pre-calibrated and certified. But I would be quite surprised if that certification/calibration _actually_ cost ~$9000.
But self-calibrating is still something else. Unless I pay some lab with traceable calibration to do it for me I can't use the results to certify other equipment for example. I think it's more like insurance, sure the unit cost is low but you pay extra so in case the lab screws up they pay for the mess.
Companies face the build-or-buy question every day. This article demonstrates that you can build and validate your build with the knowledge and skills expected of most principal investigators. If I were a lab director, I would want my people to be able to consider building when it makes sense, particularly since we can then integrate systems and tailor validation to our requirements.
That's the stuff of proprietary IP and career advancement.
Calibration can be done in house, certification is usually the domain of some certification institution and can be extremely expensive depending on the kind of gear.
https://www.instructables.com/cheap-DIY-electronic-pH-meter/
You explore the solution-space, and suddenly, out of nowhere it changes your perspective on another aspect, and you realize you may not need a spectrometer at all to measure ion concentartion in aeroponic nutrient solutions.
http://jupiter.plymouth.edu/~jsduncan/courses../2011_Fall/In...