The Declaration of Independence declares it self-evident that people have the right to life, liberty, and the pursuit of happiness, and that the purpose of governments is to secure these rights, subject to the consent of the governed.
Unless I'm misreading it, the Declaration of Independence doesn't directly mention freedom of speech.
Also, presumably these tools are being used to prioritize applicants based on a benefit/risk assessment. If the purpose isn't to deny entry as a form of punishment, then freedom of speech presumably wouldn't come into the picture. Intent matters. Prioritization isn't necessarily punishment.