Just as there are "clean youtube" browser extensions and the like, the interwebs are in dire need of a "clean github" browser extension.
div#repo_details { opacity:0.3 !important; } ul.with-details-box { opacity:0.3 !important;}
to make those fade a bit and draw you eye toward the menu bars below them. You could event apply it your specific repo urls, so you could customize it depending on what you're working on.
Again, only a temporary hack, but better than nothing until a better universal design can be agreed upon and implemented.
Stylish: https://addons.mozilla.org/en-US/firefox/addon/stylish/