This is why I like Crutchfield's Epsilon Machine formalism[1]. He factorizes Kolmogorov Complexity into a noise part (Shannon Entropy) and a "computational part", which measures the structural complexity of the smallest probabilistic finite state machine that is an optimal predictor of the data sequence, under some coarse-graining. If the size of the optimal machine gets bigger and bigger the more fine-grained your measurement, then there's no finite representation of the sequence as a FSM, so you "jump up one level" to a stack machine and try again.
In the coin-flipping example above, the epsilon machine will correctly factor out all of the noise in the sequence, leaving you with a simple probabilistic model of a coin-flip process.
This procedure is also computable, and even practical: you can implement the FSM-only algorithm in a couple hundred lines of code.
[1]: https://csc.ucdavis.edu/~cmg/compmech/pubs/CalcEmergTitlePag...