Here comes the first pitchfork-bearer! Are there ready examples of what makes the usage of Perl a security liability?
By grouping PHP and Perl together, it seems like the security issue you're highlighting is websites made by inexperienced programmers. Perl is much worse than PHP in this regard owing to the fact that Perl's history of being used by people building their first website goes back further than PHP's does.
The last time that I recall Perl being in the news for security was in the first quarter of this year when they were patching up the DDoS vulnerability in Ruby and Python [1] whereas Perl and CRuby had addressed the vulnerability in question in 2004.
I would argue that at least since 2007 or 2008, that the Perl programming demographics have shifted significantly and that most restauranteurs and florists who are trying their hand at making a page for their SMB are using PHP. At this point I would venture that the fat part of the bell curve of the Perl web programming population would be systems administrators who venture outside the bounds of their automation scripting domain.
Given the stereotypical sysadmin, I would posit that they might tend to spend extra time and energy on security (in building some script-y spaghetti monstrosity).
1. http://arstechnica.com/business/news/2011/12/huge-portions-o...