This is only an issue with plain numbers, however. If you'd have the number in an object or array, you'd detect the truncation just as well. Since using jsonl for a plain list of numbers is... overkill, I'd say it's not an issue.
On the other hand, requiring line terminators in the standard would inevitably lead to incompatibility issues. Most software would accept unterminated files, because text libraries do; and so some files will not be terminated. Some applications do not line-terminate files even on Linux (hello VSCode), and it would be even more problematic on Windows