I built a similar tool for my own use that:

1. Takes in a .dot file 2. Presents a simple UI for selecting which tables/relationships you want in the final diagram 3. Lets you highlight a table and add all directly related tables to the selected tables 4. Lets you select two tables and adds the tables for the shortest route between the tables 5. Lets you assign colors to tables/relationships for the final diagram 6. Optionally shows only key fields in the final diagram 7. Generates the necessary graph source and copies it to the clipboard, and loads either of two GraphViz pages to let you paste the source and see the graph.

If that would be of interest to anyone I'd be happy to post it.