Not really. Any place with a decent QA department would sample a part, compare it to the specification, and raise an alarm because the part differs from the specification. There also should be occasional audits on the build process itself, which should have identified this, as it would differ from the specified process.
This type of issue (again, assuming the articles wording is true -- I have no idea) can only occur if there is either bad/missing QA, or bad/missing specifications.
>But it is very common for changes to get introduced at build time of physical things
Even in construction you need to have changes approved (i.e. a "change order" approved by the architect, engineer, and owner). Even extremely minor changes (which this would not be) must be documented on the "as-built" drawings.