It happened to crocodiles and it could happen to you too.
Edit, I scrolled down and it covers the genome:
• Shape (8 genes, 1 per vertex)
• Wheel size (2 genes, 1 per wheel)
• Wheel position (2 genes, 1 per wheel)
• Wheel density (2 genes, 1 per wheel) darker wheels mean denser wheels
• Chassis density (1 gene) darker body means denser chassis
It basically lands on a two-wheeled medium-bodied shape and doesn't seem to make much progress after that. Power and speed would be interesting variations.
I wasn't fooling. Think about it for a second, if your process involves a lot of crossover that means large sections of working genome will be passed on. If the ONLY mechanism for changing anything is mutation, then mostly you're just breaking what works.
That's what you're describing, so I'd look at how the genome is constructed to understand why it's not doing more.