There isn't a reason to think that those clusters would in any way map on to how we culturally, currently talk about race. Nor is there a single, well-defined way to cluster human genomes plotted in some very high dimensional space.
> You can use that argument to say there's no difference between trees and bushes
That's actually a perfect example. We have a word in English—"tree"—that refers to a large number of different species of plant. And you could plot plant genomes, and do a cluster analysis on them. But there will be no cluster that corresponds to the english word "tree". Genetically, there isn't a single "tree" ancestor, that all trees descended from. Instead, what we call "tree" evolved repeatedly at different points in time, and so no matter how you cluster the genes, what we refer to as "tree" will always be spread out among different clusters.