However, the way you arrive at 1 + 1 = 2 is not the same (though I suppose you could short-circuit the algorithm). Rational addition requires finding a common denominator, while integer addition doesn't. They achieve the same result when the inputs are integers, and again this is by design, but the process isn't the same. Ditto real addition vs. rational and complex addition vs. real.
In higher-level mathematics, the operations on the objects become definitional. We don't look at just a set of things, we look at a set of things and the set of operations upon those things. Thus "1 with integer addition and integer multiplication" becomes the object under consideration (even if it's just contextually understood) instead of simply 1. This is why they don't satisfy higher-level notions of equivalence, even if they intentionally do satisfy simple equality as taught in grade school.
Of course, the entire point of the submitted paper is to examine this in detail.