There are tools that will tell you they're missing, however. Read up on Valgrind and ASAN.
In C, non-global variables go out of scope when the function they are created in ends. So if you malloc() in a fn, free() at the end.
If you're doing everything with globals in a short-running program, let the OS do it if that suits you (makes me feel dirty).
This whole problem doesn't get crazy until your program gets more complicated. Once you have a lot of pointers among objects with different lifetimes. or you decide to add some concurrency (or parallelism), or when you have a lot of cooks in the kitchen.
In the applications you say you are writing, just ask yourself if you're going to use a variable again. If not, and it is using dynamically-allocated memory, free() it.
Don't psych yourself out, it's just C.
And yes, there are ref-counting libraries for C. But I wouldn't want to write my program twice, once to use the ref-counting library in debug mode and another to use malloc/free in release mode. That sounds exhausting for all but the most trivial programs.