There's 2 solutions I've thought of but haven't tried implementing:
1. A free-recall based approach. Free recall allows you to operate at a higher level of organization and connect concepts at lower levels. However, how you would schedule SRS with free recall is not clear.
2. Have an LLM generate questions on-the-fly so that you don't overtrain on prompts. You might also instruct the LLM to create questions that connect multiple concepts together. The problem with this approach is that LLMs are still not so good at creating good test questions.