Don’t follow trends and seek the “next best way to hack your productivity”. Most of those things are snake oil and a waste of time. Just use whatever you have available and build a process yourself. That’s what most people have done that are successful in applying this. They just use the tool they are comfortable with, and don’t over engineer for the sake of it
And eventhough Onenote is MS product and Evernote was the original that OneNote copied off of, OneNote is a better engineered piece of software (I have tons of notes and a few of them very large documents), and Onenote rarely has problems.
Why so? It is always in front of you, it reminds you what you need to do and does not get out of sight, which helps keep the focus.
When you bury it or set it somewhere else it is very easy to bury it.
But, I use different things for different situations.
For work, I use text files in a "howto/" subdirectory of a main repo.