Where does one draw the line on support? If I jailbreak an iPhone, should I still get Apple customer support for the apps on it, even though they may have been manipulated by some aspect of the jailbreak? (Very real problem, easy to cause crashes in other apps when you mess around with root access) Should I still get a battery replacement within warranty from Apple even though I've used software that runs the battery hotter and faster than it would on average on a non-jailbroken iPhone?
I feel like changing the software shouldn't void your warranty, but I can see arguments against that. I probably fall on the side of losing all software support if you make changes like this, but even then it's not clear cut.