No, that's not how I believe they intended it to work. They generate the workload-specific engine up-front and not when the query arrives.
The catch is obviously that the development is way too expensive and that it takes a lot of technical capability which isn't really all that common. The novelty which this paper presents is that these two barriers might have come to an end - we can use LLMs and agents to build custom database engines for ourselves™ and our™ specific workloads, very quickly and for a tiny fraction of development price.