There's been a whole ramp up of very exquisite technology to try to get the upper hand here, but I don't expect we'll see the carrier be the force it has been over the last few generations. It's just too tempting a target.
You can afford to spend a few million when you’re taking down billions of dollars worth of hardware.
I would think a simultaneous barrage of maneuvering hypersonic missiles would pose a much bigger threat. A CIWS or three can take down a lot of slow drones.
and send that number + 1 drone.
.
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of course it's a bit oversimplified, but really with decoys, and putting cheap shaped charges on them ... they can fuck up the launch/landing surfaces, the AA capabilities, there's absolutely no way to jam them if they have the "last mile" set to automatic.
(yes, in theory a dumb and big fireball or good old flack can take out a lot of them, seems trivial, but in practice we don't see that, instead we see faster drones trying to intercept them)
Or you know, lob 12 anti ship missiles at it and call it a day.