Many nonprinting characters imply some directive; line break (hard-wrap the text here, but this is not a paragraph), page break (let the rest of the page be blank, start the next paragraph overleaf), EOL (file over, bye bye), nonbreaking space (keep these two words together, always, till death do them part).
This is out-of-band information spliced in-band (with the text corpus), which a computer program can "see", but a person can't.
(In my ideas of an operating system design, there is a structured binary format (similar to DER but different) used for most files and data, so that the tools (and the command shell) would be usable consistently with most of them; and if some need special handling, you can use other programs and functions to convert them and/or handle them in a way that can be interoperable.)