It's fun to imagine the type of replicator a Type I civilization might be able to produce. Imagine a machine that takes hydrogen and energy (or just energy) and builds, from the subatomic particles up, all the elements needed for production (just as stars do). Then, using a combination of scaffolding, precise placement, and self-replicating nano-structures, creates any object, organic or otherwise. Who knows, we may ultimately figure out how to manipulate a more fundamental physical substrate than just "packets of energy orbiting each other" and so create exotic but stable condensates and states of matter we can now only imagine. This would be something akin to using the hypothetical "quantum foam" as a sculpting material.

Granted, this all requires physics that aren't currently understood and may not even exist, and the amount of energy required would be staggering, but a true "anything replicator" would surpass the Star Trek vision into something that needed no "raw materials" at all except energy.