There's lots of solutions, I also find compose hits the sweet spot for integration into my homelab
One distribution method is flexible and can be deployed however you want, the other prescribes solutions and makes any customization difficult.
Most applications do ship in a single container. whether it's a single binary inside, or a bunch of python or js files or shell scripts is a separate issue. If there is a dockerfile then you know how to build the container. a single binary is easier to build the container for yourself, assuming you also know the binary dependencies of that single binary. Like maybe ffmpeg or yt-dl cli on the path?
Applications that ship as a list of containers are a completely different problem. Those applications are either a victim of their own success, or have developers that come from a particular background.