IIRC some the guys who hijacked the planes took flying lessons and were notoriously uninterested in takeoff and landing compared to steering, according to their instructors. They weren't very sophisticate.
I'll give you the benefit of the doubt, though. In a conspirational mindset, if it was a false flag operation (and it did help USA find support to rearrange the Middle East oil control, get rid of their old bomb stock, and a few other perks), a State certainly has the proper people to plan such scheme, and the actual hijackers would only need to know which face and height of the towers to hit, and at what angle and speed.
I get that my comment probably didn't reach the "insightfulness" threshold for HN, but geez, go easy on me.
I'd guess that wasn't deliberate also, since logistically, it was better to hijack the plane while it was in range of their target, and it had enough fuel to make it look like kidnapping instead of terrorism to delay the response. One can't ignore that a refueled plane weighs about 20-25% more, though.