Might be nice to scope out where exactly it is good and where it is lacking ; residential vs commercial vs industrial , A vs S vs MEP, style of architecture? We need better benchmarking here to substantiate.
A build permit simply says that they reasonably believe you can build the thing such that it will pass inspections. It doesn’t mean that every single detail will be finalized or correct.
Have you considered the possibility that they meant exactly what they stated? That the output is good enough to reasonably believe it can be built and pass inspection,but it may still include flaws in details?