The advantage of FPGAs is that they allow nontrivial parallelism. On a CPU with 4 cores, you can run 4 instructions at a time (ignoring the pipelining). On the FPGA, you can run any number of operations at the same time, as long as the FPGA is big enough. The problem is not the low-level nature of hardware description languages, the problem is that we still don't have a smart compiler that can release us from the difficulty of writing nontrivial massively-parallel code.