Actually I thought the article put him in a better light than most of the other pieces about him. It makes him out to be more in tune with the ways the gov could track him. If they wanted to smear him then NYT could just come out with a short piece saying "Snowden made his Lawyers put their Phones in the Fridge", and then just spend the rest of the article speculating about his growing paranoia and questioning the decision.
Instead they explained the logic behind the seemingly unreasonable request. How is that being malicious?