First: thanks for your work on Protocol Buffers. I've used it fairly extensively for RPC communications between C++/Java clients and a Java service. It made things so much easier to get native objects in each language using a well-defined protocol.
One thing that bugged me about Protobuf is that it provided a skeletal mechanism for RPC (e.g. RpcController/RpcChannel) but later deprecated the use of that mechanism in favor of code-generating plugins. Since Cap'n Proto is billed as an "RPC system", do you have plans to include a more fleshed-out version of RPC than was provided in Protocol buffers? Having abstract classes for event-handling and transport mechanisms is a good idea for extensibility but it sure would make it easier for your users if there was at least one default implementation of each.
I imagine that Google has standard implementations of these things internally but balked at trying to support them for multiple languages as an open source project.