Until recently I don't think any major hash table implementation (e.g. not Java, STL, Python, Ruby, etc) used a cryptographically secure hashing algorithm. They're just too slow. Slow enough that you might as well use a tree-based data structure, which doesn't suffer from hash-collision based attacks.
This is changing a bit now when SipHash is available. Unfortunately SipHash still is a bit too slow and forces an uncomfortable trade-off.