There is a perverse incentive here. If commenters can push an article off the front page by flaming, the flamewar detector would actually encourage flaming.
The important thing with a situation like that is to be ready to kill the feature as soon as people learn how to exploit it. It's one thing to see that it's theoretically exploitable. It's another to actually figure out how to selectively engineer flame wars to make a significant dent in the front page.
That is, if this is a actually problem and not only a theoretical one.
If I were an astroturfer, grooming accounts would be part of my daily routine. I'd probably automate it too.