Programs generally need to deal with textual data at one of three levels:
1. Manipulate strings and substrings. e.g., "does string x contain substring y"? Byte sequences of utf8 data are fine for this. You may need to normalize the data first, but that's true of codepoint sequences as well.
2. Deal with a small number of specific ASCII codepoints--e.g., the filename separator character. Again, utf8 byte strings are fine for this.
3. Deal with glyphs, including glyphs composed of multiple combining characters. You need to iterate to assemble the glyphs, so a codepoint sequence offers no advantages over a byte sequence of utf8 with a codepoint iterator.
A sequence of bytes is just fine as a native string type. Store Unicode data as utf8-encoded byte strings. Provide easy iteration over codepoints in utf8 strings, transcoding for I/O, normalization functions, etc. Call it a day.