It's a pity that this kind of behavior is par for the course in the category of "controversial environmental findings," because there are plenty of legitimate questions to ask and legitimate issues to raise.
I have no relation to Monsanto, except that I eat their products. We talked about this paper [1] in journal club and were unimpressed (except by their criticism of Monsanto's methodology, which was, ironically, spot on). I wasn't aware of Monsanto's formal response [2] at the time, but from a brief glance it appears to hit the nail on the head.
[1] http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2793308/
[2] http://www.monsanto.com/newsviews/Documents/SpirouxdeVendimo...