I must admit, that I did not think to much about it until now, but normally there is only /usr/bin/python in the scripts.
Of course, if everybody has /usr/bin/python3 inside his Python3 programs, everything could work (unless some of your apps need special environment vars like PYTHONPATH, what could make it troublesome again).
But still, the standard installation of Debian (and others, as much I know) does not include Python3 by default, you at least have to add it to your installation. That is something, you must tell your customers, when you ship Python3 programs.