There was/is an iOS bug where changing orientation after zooming would cut-off some of the page, most websites simply disable all zooming to "fix" it. http://blog.pgrady.com/post/29511322784/fixing-the-ios-orien...
A lot of people at StackExchange seem to recommend zooming though:
http://ux.stackexchange.com/questions/19464/should-mobile-op...