From Wiki
"For the time being there are no good technical means to counteract misuse of NTP servers"
Sigh
Sigh
It should be straight forward to implement a protocol that each NTP server won't send data to the same ip more than once every 10 seconds regardless of the number of requests.
enabling source filtering in all networks will essentially kill off these UDP amplification attacks, because the attacker wouldn't be able to spoof your address as the source address.
If you can arrange with your upstream internet access provider for them to filter out junk before it hits the bottleneck, then great - but that involves cooperating with people, which may take some time.