Literate Coffeescript comes out of the box with Coffeescript. I kind of like it, especially for complicated algorithms where the ammount of comments exceed the lines of code. Here's an example [1] of a kd-tree implementation in literate coffee. It reads beautifully on Github as well, since it's Markdown!
[1] https://github.com/axiomzen/Look-Alike/blob/master/coffee/kd...