What we know, after I and Moustache and DeepDotWeb have gone through the warrants & complaints, is that a handful (~78) IPs were deanonymized as late as July 2014 after accessing the Silk Road 2 vendor .onion. This is almost certainly due to the UC account 'Cirrus' in some form, who was perfectly placed to de-anonymize the SR2 servers and insert a payload into the landing page. A former SR2 employee says they were even using crummy commercial software like 'DeskPro' on the SR2 servers.
In other words, right now the evidence is consistent with a Freedom Hosting redux scenario: the FBI has gotten another Tor Browser or other browser exploit and then phoned home. It could also be the big mysterious attack, but why would they do that when they had an insider who was involved in hiring additional employees? And also given that the SR2 vendor onion should have been seeing a lot of traffic from vendors who almost all preferred to use it due to better uptime, a mere 78 IPs sounds low.
Further reading:
- https://www.reddit.com/r/DarkNetMarkets/comments/2sppy0/sr2_...
- https://www.reddit.com/r/DarkNetMarkets/comments/2t30hs/the_...