The primary problem is that the zepto.Z function overrides dom.__proto__, which prevents many JIT optimizations. Overriding an object's __proto__ property is strongly discouraged and will be deprecated in ES6 --Firefox bug 947048
But honestly, if you load jQuery from a big-time CDN, chances are your users already have it cached and don't need to load anything.
Furthermore, I don't think he's making up a strawman at all now matter how you look at it. He agreed with the article. You CAN re-implement jQuery in 10 lines of code if all you want is 0.1% the functionality of jQuery. That's what the article said and it is true. It's not an argument against any perceived strawman.
The next paragraph was praise for jQuery and the final paragraph said it's fine to not use jQuery and added an opinion about what "these kinds of posts seem like". Where's the strawman?
Headlines are supposed to be ambiguous, in the sense that they are much shorter than the content they accompany (and thus there are fewer possible headlines than there are possible articles). You're expected to read the content.