I listed some of the assumptions we made in another comment https://news.ycombinator.com/item?id=10018985 .
The question you ask was believed for a long time to be the death knell of formal verification. It was persuasively argued in "Social Processes and Proofs of Theorems and Programs" https://www.cs.umd.edu/~gasarch/BLOGPAPERS/social.pdf that any proof of a complex system is necessarily at least as complex. Thus there would be no reason to trust the proof any more than the original code.
The breakthrough in verification came when we started using machine-checked proofs. In this approach, you write a short, simple, and trusted proof checker. You can then verify complex systems using complex proofs that are checked by the simple checker. Then the only possible errors in the proof can come from the proof checker being wrong. Because the checker is simple and general (ie, it can check all kinds of proofs, not just proofs about a particular program), it is more trustworthy.
Just to reiterate (including some content from my other comment): we can be wrong only if we have written the wrong definition of linearizability, misstated the correctness theorem, or if there is a bug in the proof checker or in Coq's logic itself.
This Coq proof is an enormous step forward. It's that machine-checked proof I was hoping someone would do when I wrote the above paragraph. 1) Assuming the TCB is correct, we know the Verdi implementation satisfies linearizability. 2) Assuming the TCB is correct and the Verdi implementation and the Raft paper/dissertation/spec are equivalent, then the Raft algorithm satisfies linearizability too.
I'm more willing to believe that the Verdi implementation implements Raft faithfully than I am willing to believe that my hand proof is correct. If you're really worried about (2), you have the option of using the Verdi generated implementation. If you're less worried about (2), you can now have more confidence in the safety of the Raft algorithm in general.