Career security is exactly it, especially if by "not a superstar" you mean "not particularly competent". And yes, the folks I've run across at Redstone have indeed been using typical commercial tools like SAP (favorite quote: "Why is this database column named 'herst'?"), DOORS, and some really horrible contract management stuff, and the usual assorted (SAP and otherwise) portals. And indeed, Java; I think I heard that the Army guys upgraded past 1.4 a couple of years ago.
I don't want to get started about cost-plus contracting, but here's a tip, if you're ever in that business again: hire friendly, personable, but not overly skilled people.
The government side is divided into two groups: program management, which are really only concerned with the money going out and are the other half of the contracting follies (see my DAU link previous), and project management; people who are on one hand interested in getting their work done and in the other on increasing the size and importance of their empires. Neither would know technical work from a hole in the ground, or if they did it was so long ago as to be irrelevant.
The project folks are on your side since the more there are of you, the more important they look. If your employees are good at being friendly with them, you're golden. All you have to do is convince the program management people that you're working really, really hard and that the problems are very, very difficult (hence the "not overly skilled" part), and the project managers will do most of that for you.
Just don't ever, ever, convert a cost-plus contract (where you as the prime contractor have cost-plus subcontracts) to fixed-price while not changing the subcontracts to fixed price. (And I'm looking at you, SAIC.)
There is one difference, in my experience between contracting commercially and for the government. The overhead for me when I was doing work for IBM (in the 90's and '00s) was 13-15%; the overhead for me doing work for NASA was somewhere close to 100%, judging by the GSA schedules for related contracts---I never could find the schedule for UNITeS or EAST.